q2-ena-uploader

bokulich-lab

Quickstart install for:

[Fresh Install]

[Fresh Install (Apple Silicon)]

[Update Existing]

conda env create --name q2-ena-uploader-moshpit-2026.7 --file https://raw.githubusercontent.com/bokulich-lab/q2-ena-uploader/refs/heads/main/environment-files/q2-ena-uploader-rachis-moshpit-2026.7.yml

CONDA_SUBDIR=osx-64 conda env create \
  --name q2-ena-uploader-moshpit-2026.7 \
  --file https://raw.githubusercontent.com/bokulich-lab/q2-ena-uploader/refs/heads/main/environment-files/q2-ena-uploader-rachis-moshpit-2026.7.yml
conda activate q2-ena-uploader-moshpit-2026.7
conda config --env --set subdir osx-64

Activate your environment (moshpit) and run:

conda env update --file https://raw.githubusercontent.com/bokulich-lab/q2-ena-uploader/refs/heads/main/environment-files/q2-ena-uploader-rachis-moshpit-2026.7.yml

2026.7.02026.7.0
Thu Jul 23 2026
What’s Changed¶
- MAINT: add env files for 2026.4.0 by @misialq in #30
- MAINT: add test-env-files GitHub workflow by @misialq in #31
Full Changelog: #2026.4.0...2026.7.0
What’s Changed¶
MAINT: add env files for 2026.4.0 by @misialq in #30
MAINT: add test-env-files GitHub workflow by @misialq in #31
Full Changelog: #2026.4.0...2026.7.0
What’s Changed¶
MAINT: add env files for 2026.4.0 by @misialq in #30
MAINT: add test-env-files GitHub workflow by @misialq in #31
Full Changelog: #2026.4.0...2026.7.0
What’s Changed¶
MAINT: add env files for 2026.4.0 by @misialq in #30
MAINT: add test-env-files GitHub workflow by @misialq in #31
Full Changelog: #2026.4.0...2026.7.0
2026.4.02026.4.0
Mon Apr 27 2026
2026.1.02026.1.0
Fri Feb 20 2026
What’s Changed¶
- MAINT: add Zenodo DOI to the README by @misialq in #18
- DOC: QIIME 2 data import section by @ZuzanaSebb in #21
- ENH: new experiment-extended files by @ZuzanaSebb in #22
- DOC: add overview of sample template submissions by @ZuzanaSebb in #23
- FIX: MyST Markdown image rendering issue by @ZuzanaSebb in #24
Full Changelog: #2025.10.0...2026.1.0
What’s Changed¶
MAINT: add Zenodo DOI to the README by @misialq in #18
DOC: QIIME 2 data import section by @ZuzanaSebb in #21
ENH: new experiment-extended files by @ZuzanaSebb in #22
DOC: add overview of sample template submissions by @ZuzanaSebb in #23
FIX: MyST Markdown image rendering issue by @ZuzanaSebb in #24
Full Changelog: #2025.10.0...2026.1.0
What’s Changed¶
MAINT: add Zenodo DOI to the README by @misialq in #18
DOC: QIIME 2 data import section by @ZuzanaSebb in #21
ENH: new experiment-extended files by @ZuzanaSebb in #22
DOC: add overview of sample template submissions by @ZuzanaSebb in #23
FIX: MyST Markdown image rendering issue by @ZuzanaSebb in #24
Full Changelog: #2025.10.0...2026.1.0
What’s Changed¶
MAINT: add Zenodo DOI to the README by @misialq in #18
DOC: QIIME 2 data import section by @ZuzanaSebb in #21
ENH: new experiment-extended files by @ZuzanaSebb in #22
DOC: add overview of sample template submissions by @ZuzanaSebb in #23
FIX: MyST Markdown image rendering issue by @ZuzanaSebb in #24
Full Changelog: #2025.10.0...2026.1.0
2025.10.02025.10.0
Tue Nov 18 2025
What’s Changed¶
- ENH: inject QIIME-related metadata into study attributes by @misialq in #3
- CI: add updated workflows by @misialq in #5
- MAINT: add environment file by @misialq in #6
- FIX: correct the path to the env file by @misialq in #7
- CI: trigger workflow on tag push by @misialq in #8
- CI: improve Docker image tags by @misialq in #9
- CI: add study workflow by @misialq in #10
- CI: update the study count workflow by @misialq in #11
- CI: adjust the address of the git remote repo by @misialq in #12
- MAINT: make the README links absolute by @misialq in #13
- FIX: study count workflow updates by @misialq in #14
- ENH: only commit study/sample counts if changed by @misialq in #15
- ADD: MyST documentation by @ZuzanaSebb in #16
- MAINT: add env file for QIIME 2 2025.10 by @misialq in #17
New Contributors¶
- @ZuzanaSebb made their first contribution in #16
Full Changelog: #2024.10.0...2025.10.0
What’s Changed¶
ENH: inject QIIME-related metadata into study attributes by @misialq in #3
CI: add updated workflows by @misialq in #5
MAINT: add environment file by @misialq in #6
FIX: correct the path to the env file by @misialq in #7
CI: trigger workflow on tag push by @misialq in #8
CI: improve Docker image tags by @misialq in #9
CI: add study workflow by @misialq in #10
CI: update the study count workflow by @misialq in #11
CI: adjust the address of the git remote repo by @misialq in #12
MAINT: make the README links absolute by @misialq in #13
FIX: study count workflow updates by @misialq in #14
ENH: only commit study/sample counts if changed by @misialq in #15
ADD: MyST documentation by @ZuzanaSebb in #16
MAINT: add env file for QIIME 2 2025.10 by @misialq in #17
New Contributors¶
@ZuzanaSebb made their first contribution in #16
Full Changelog: #2024.10.0...2025.10.0
What’s Changed¶
ENH: inject QIIME-related metadata into study attributes by @misialq in #3
CI: add updated workflows by @misialq in #5
MAINT: add environment file by @misialq in #6
FIX: correct the path to the env file by @misialq in #7
CI: trigger workflow on tag push by @misialq in #8
CI: improve Docker image tags by @misialq in #9
CI: add study workflow by @misialq in #10
CI: update the study count workflow by @misialq in #11
CI: adjust the address of the git remote repo by @misialq in #12
MAINT: make the README links absolute by @misialq in #13
FIX: study count workflow updates by @misialq in #14
ENH: only commit study/sample counts if changed by @misialq in #15
ADD: MyST documentation by @ZuzanaSebb in #16
MAINT: add env file for QIIME 2 2025.10 by @misialq in #17
New Contributors¶
@ZuzanaSebb made their first contribution in #16
Full Changelog: #2024.10.0...2025.10.0
What’s Changed¶
ENH: inject QIIME-related metadata into study attributes by @misialq in #3
CI: add updated workflows by @misialq in #5
MAINT: add environment file by @misialq in #6
FIX: correct the path to the env file by @misialq in #7
CI: trigger workflow on tag push by @misialq in #8
CI: improve Docker image tags by @misialq in #9
CI: add study workflow by @misialq in #10
CI: update the study count workflow by @misialq in #11
CI: adjust the address of the git remote repo by @misialq in #12
MAINT: make the README links absolute by @misialq in #13
FIX: study count workflow updates by @misialq in #14
ENH: only commit study/sample counts if changed by @misialq in #15
ADD: MyST documentation by @ZuzanaSebb in #16
MAINT: add env file for QIIME 2 2025.10 by @misialq in #17
New Contributors¶
@ZuzanaSebb made their first contribution in #16
Full Changelog: #2024.10.0...2025.10.0
2025.10.0.dev02025.10.0.dev0
Fri Oct 03 2025
2025.4.0.dev12025.4.0.dev1
Wed Apr 30 2025
2025.4.0.dev02025.4.0.dev0
Thu Mar 13 2025
2024.10.02024.10.0
Thu Mar 13 2025

Links

Documentation

Source Code

Stars

Last Commit

8f730b8

Available Distros

2026.7: 2026.7/moshpit; 2026.7/qiime2; 2026.7/tiny
2026.4: 2026.4/moshpit; 2026.4/qiime2; 2026.4/tiny
2026.1: 2026.1/tiny
2025.10: 2025.10/tiny
2025.7: 2025.7/tiny
2025.4: 2025.4/tiny

2026.7.02026.7.0

What’s Changed¶

What’s Changed¶

What’s Changed¶

What’s Changed¶

2026.4.02026.4.0

2026.1.02026.1.0

What’s Changed¶

What’s Changed¶

What’s Changed¶

What’s Changed¶

2025.10.02025.10.0

What’s Changed¶

New Contributors¶

What’s Changed¶

New Contributors¶

What’s Changed¶

New Contributors¶

What’s Changed¶

New Contributors¶

2025.10.0.dev02025.10.0.dev0

2025.4.0.dev12025.4.0.dev1

2025.4.0.dev02025.4.0.dev0

2024.10.02024.10.0