q2-assembly

bokulich-lab

Quickstart install for:

[Fresh Install]

[Fresh Install (Apple Silicon)]

[Update Existing]

conda env create --name q2-assembly-moshpit-2025.10 --file https://raw.githubusercontent.com/bokulich-lab/q2-assembly/refs/heads/main/environment-files/q2-assembly-qiime2-moshpit-2025.10.yml

CONDA_SUBDIR=osx-64 conda env create \
  --name q2-assembly-moshpit-2025.10 \
  --file https://raw.githubusercontent.com/bokulich-lab/q2-assembly/refs/heads/main/environment-files/q2-assembly-qiime2-moshpit-2025.10.yml
conda activate q2-assembly-moshpit-2025.10
conda config --env --set subdir osx-64

2025.10.02025.10.0
Mon Nov 24 2025
What’s Changed¶
- FIX: enable multi-processing on Linux by @misialq in #33
- fix file name to sample id assumption by @gregcaporaso in #38
- Specify default settings for all actions by @nbokulich in #43
- FIX: correct indexing params spec by @misialq in #45
- ENH: allow passing genome references to evaluate-contigs action by @misialq in #44
- PIN: relax bowtie2 pin to resolve community distro failures by @lizgehret in #47
- CI: update to new CI by @ebolyen in #53
- Closes Issue #51: Cannot download some files from the evaluate-contigs qzv by @Sann5 in #52
- BUG: fix phred-offset autodetection by @misialq in #57
- MAINT: update README badges by @misialq in #61
- Added handling for empty or None sample_names by @ChristosMatzoros in #50
- Issue 42: expose additional visualizations generated by QUAST in the evaluate-contigs visualization by @Sann5 in #54
- adding more params to evaluate_contigs by @mikerobeson in #65
- error informatively on empty input files for index-contigs by @colinvwood in #63
- collect all contig files inside index-contigs by @colinvwood in #59
- DEP: add pysam to the list of dependencies by @misialq in #67
- Parallelize assemble megahit by @Oddant1 in #46
- No more types genomics by @Oddant1 in #71
- ENH: co-assembling contigs from multiple samples (#22) by @DorielaGrabocka in #68
- CI: update the distro by @misialq in #79
- ENH: allow passing already aligned reads to evaluate-quast by @DorielaGrabocka in #78
- FIX: QUAST visualization button links should point to the correct set of files by @misialq in #75
- ENH: add the ability to generate QUAST visualizations without Icarus viewers by @misialq in #74
- LANG: dependency testing for python 3.9 updates to metagenome distro by @lizgehret in #80
- PIN: adds pysam back into recipe file by @lizgehret in #86
- DEV: 2024.10 by @nbokulich in #87
- ENH: add more indexing and read mapping options by @misialq in #81
- ENH: evaluate-contigs action outputs a results table to enable filtering of samples by @DorielaGrabocka in #85
- ENH: make contig IDs unique across samples by @DorielaGrabocka in #88
- ENH: action to rename contigs using shortuuid, uuid3, uuid4 or uuid5 by @DorielaGrabocka in #89
- Use new test config by @Oddant1 in #94
- REF: fix private imports for q2-types refactor by @ebolyen in #95
- FIX: pass BAM files to metaquast in the correct order by @misialq in #90
- ENH: QUAST outputs downloaded genome artifacts by @DorielaGrabocka in #96
- ENH: add action to collate genomes to GenomeData[DNASequences] by @DorielaGrabocka in #99
- MAINT: use tempfiles in tests by @misialq in #100
- CI: Update download and upload artifact actions to v4 by @VinzentRisch in #103
- MAINT: update README by @misialq in #104
- setup.py -> pyproject.toml by @q2d2 in #107
- BUG: fix path in version file by @lizgehret in #109
- MAINT: update SPAdes to 4.0.0 by @misialq in #108
- PIN: template out SPAdes version req by @lizgehret in #110
- ENH: add ‘filter-contigs’ action by @misialq in #92
- MAINT: update recipe run reqs to require most recent q2-pkg builds by @lizgehret in #111
- MAINT: change input and output names for consistency by @VinzentRisch in #112
- FIX: remove the ‘meta’ option from assemble-megahit presets by @misialq in #113
- ENH: add an action to simulate reads with mason by @misialq in #115
- CI: update workflows to the most recent versions by @misialq in #117
- CI: split Q2 workflow into a seprate yaml by @misialq in #119
- CI: update the Docker push workflow by @misialq in #120
- MAINT: repository maintenance by @misialq in #121
- CI: build Docker image when tagged by @misialq in #122
- ENH: allow contig filtering based on metadata IDs only by @Copilot in #124
- DEP: template out version pins by @lizgehret in #128
- Small help text typos by @colinvwood in #125
- BUG: Fix assembly-megahit fails when num_cpu_threads > 1 on Macs by auto-resetting num_cpu_threads to 1 by @fethalen in #133
- CI: add changelog workflow by @misialq in #136
- MAINT: remove actions collate_contigs, collate_genomes and partition_contigs by @VinzentRisch in #135
New Contributors¶
- @gregcaporaso made their first contribution in #38
- @nbokulich made their first contribution in #43
- @lizgehret made their first contribution in #47
- @Sann5 made their first contribution in #52
- @ChristosMatzoros made their first contribution in #50
- @mikerobeson made their first contribution in #65
- @colinvwood made their first contribution in #63
- @Oddant1 made their first contribution in #46
- @DorielaGrabocka made their first contribution in #68
- @VinzentRisch made their first contribution in #103
- @q2d2 made their first contribution in #107
- @Copilot made their first contribution in #124
- @fethalen made their first contribution in #133
Full Changelog: #2022.11.0...2025.10.0
What’s Changed¶
FIX: enable multi-processing on Linux by @misialq in #33
fix file name to sample id assumption by @gregcaporaso in #38
Specify default settings for all actions by @nbokulich in #43
FIX: correct indexing params spec by @misialq in #45
ENH: allow passing genome references to evaluate-contigs action by @misialq in #44
PIN: relax bowtie2 pin to resolve community distro failures by @lizgehret in #47
CI: update to new CI by @ebolyen in #53
Closes Issue #51: Cannot download some files from the evaluate-contigs qzv by @Sann5 in #52
BUG: fix phred-offset autodetection by @misialq in #57
MAINT: update README badges by @misialq in #61
Added handling for empty or None sample_names by @ChristosMatzoros in #50
Issue 42: expose additional visualizations generated by QUAST in the evaluate-contigs visualization by @Sann5 in #54
adding more params to evaluate_contigs by @mikerobeson in #65
error informatively on empty input files for index-contigs by @colinvwood in #63
collect all contig files inside index-contigs by @colinvwood in #59
DEP: add pysam to the list of dependencies by @misialq in #67
Parallelize assemble megahit by @Oddant1 in #46
No more types genomics by @Oddant1 in #71
ENH: co-assembling contigs from multiple samples (#22) by @DorielaGrabocka in #68
CI: update the distro by @misialq in #79
ENH: allow passing already aligned reads to evaluate-quast by @DorielaGrabocka in #78
FIX: QUAST visualization button links should point to the correct set of files by @misialq in #75
ENH: add the ability to generate QUAST visualizations without Icarus viewers by @misialq in #74
LANG: dependency testing for python 3.9 updates to metagenome distro by @lizgehret in #80
PIN: adds pysam back into recipe file by @lizgehret in #86
DEV: 2024.10 by @nbokulich in #87
ENH: add more indexing and read mapping options by @misialq in #81
ENH: evaluate-contigs action outputs a results table to enable filtering of samples by @DorielaGrabocka in #85
ENH: make contig IDs unique across samples by @DorielaGrabocka in #88
ENH: action to rename contigs using shortuuid, uuid3, uuid4 or uuid5 by @DorielaGrabocka in #89
Use new test config by @Oddant1 in #94
REF: fix private imports for q2-types refactor by @ebolyen in #95
FIX: pass BAM files to metaquast in the correct order by @misialq in #90
ENH: QUAST outputs downloaded genome artifacts by @DorielaGrabocka in #96
ENH: add action to collate genomes to GenomeData[DNASequences] by @DorielaGrabocka in #99
MAINT: use tempfiles in tests by @misialq in #100
CI: Update download and upload artifact actions to v4 by @VinzentRisch in #103
MAINT: update README by @misialq in #104
setup.py -> pyproject.toml by @q2d2 in #107
BUG: fix path in version file by @lizgehret in #109
MAINT: update SPAdes to 4.0.0 by @misialq in #108
PIN: template out SPAdes version req by @lizgehret in #110
ENH: add ‘filter-contigs’ action by @misialq in #92
MAINT: update recipe run reqs to require most recent q2-pkg builds by @lizgehret in #111
MAINT: change input and output names for consistency by @VinzentRisch in #112
FIX: remove the ‘meta’ option from assemble-megahit presets by @misialq in #113
ENH: add an action to simulate reads with mason by @misialq in #115
CI: update workflows to the most recent versions by @misialq in #117
CI: split Q2 workflow into a seprate yaml by @misialq in #119
CI: update the Docker push workflow by @misialq in #120
MAINT: repository maintenance by @misialq in #121
CI: build Docker image when tagged by @misialq in #122
ENH: allow contig filtering based on metadata IDs only by @Copilot in #124
DEP: template out version pins by @lizgehret in #128
Small help text typos by @colinvwood in #125
BUG: Fix assembly-megahit fails when num_cpu_threads > 1 on Macs by auto-resetting num_cpu_threads to 1 by @fethalen in #133
CI: add changelog workflow by @misialq in #136
MAINT: remove actions collate_contigs, collate_genomes and partition_contigs by @VinzentRisch in #135
New Contributors¶
@gregcaporaso made their first contribution in #38
@nbokulich made their first contribution in #43
@lizgehret made their first contribution in #47
@Sann5 made their first contribution in #52
@ChristosMatzoros made their first contribution in #50
@mikerobeson made their first contribution in #65
@colinvwood made their first contribution in #63
@Oddant1 made their first contribution in #46
@DorielaGrabocka made their first contribution in #68
@VinzentRisch made their first contribution in #103
@q2d2 made their first contribution in #107
@Copilot made their first contribution in #124
@fethalen made their first contribution in #133
Full Changelog: #2022.11.0...2025.10.0
What’s Changed¶
FIX: enable multi-processing on Linux by @misialq in #33
fix file name to sample id assumption by @gregcaporaso in #38
Specify default settings for all actions by @nbokulich in #43
FIX: correct indexing params spec by @misialq in #45
ENH: allow passing genome references to evaluate-contigs action by @misialq in #44
PIN: relax bowtie2 pin to resolve community distro failures by @lizgehret in #47
CI: update to new CI by @ebolyen in #53
Closes Issue #51: Cannot download some files from the evaluate-contigs qzv by @Sann5 in #52
BUG: fix phred-offset autodetection by @misialq in #57
MAINT: update README badges by @misialq in #61
Added handling for empty or None sample_names by @ChristosMatzoros in #50
Issue 42: expose additional visualizations generated by QUAST in the evaluate-contigs visualization by @Sann5 in #54
adding more params to evaluate_contigs by @mikerobeson in #65
error informatively on empty input files for index-contigs by @colinvwood in #63
collect all contig files inside index-contigs by @colinvwood in #59
DEP: add pysam to the list of dependencies by @misialq in #67
Parallelize assemble megahit by @Oddant1 in #46
No more types genomics by @Oddant1 in #71
ENH: co-assembling contigs from multiple samples (#22) by @DorielaGrabocka in #68
CI: update the distro by @misialq in #79
ENH: allow passing already aligned reads to evaluate-quast by @DorielaGrabocka in #78
FIX: QUAST visualization button links should point to the correct set of files by @misialq in #75
ENH: add the ability to generate QUAST visualizations without Icarus viewers by @misialq in #74
LANG: dependency testing for python 3.9 updates to metagenome distro by @lizgehret in #80
PIN: adds pysam back into recipe file by @lizgehret in #86
DEV: 2024.10 by @nbokulich in #87
ENH: add more indexing and read mapping options by @misialq in #81
ENH: evaluate-contigs action outputs a results table to enable filtering of samples by @DorielaGrabocka in #85
ENH: make contig IDs unique across samples by @DorielaGrabocka in #88
ENH: action to rename contigs using shortuuid, uuid3, uuid4 or uuid5 by @DorielaGrabocka in #89
Use new test config by @Oddant1 in #94
REF: fix private imports for q2-types refactor by @ebolyen in #95
FIX: pass BAM files to metaquast in the correct order by @misialq in #90
ENH: QUAST outputs downloaded genome artifacts by @DorielaGrabocka in #96
ENH: add action to collate genomes to GenomeData[DNASequences] by @DorielaGrabocka in #99
MAINT: use tempfiles in tests by @misialq in #100
CI: Update download and upload artifact actions to v4 by @VinzentRisch in #103
MAINT: update README by @misialq in #104
setup.py -> pyproject.toml by @q2d2 in #107
BUG: fix path in version file by @lizgehret in #109
MAINT: update SPAdes to 4.0.0 by @misialq in #108
PIN: template out SPAdes version req by @lizgehret in #110
ENH: add ‘filter-contigs’ action by @misialq in #92
MAINT: update recipe run reqs to require most recent q2-pkg builds by @lizgehret in #111
MAINT: change input and output names for consistency by @VinzentRisch in #112
FIX: remove the ‘meta’ option from assemble-megahit presets by @misialq in #113
ENH: add an action to simulate reads with mason by @misialq in #115
CI: update workflows to the most recent versions by @misialq in #117
CI: split Q2 workflow into a seprate yaml by @misialq in #119
CI: update the Docker push workflow by @misialq in #120
MAINT: repository maintenance by @misialq in #121
CI: build Docker image when tagged by @misialq in #122
ENH: allow contig filtering based on metadata IDs only by @Copilot in #124
DEP: template out version pins by @lizgehret in #128
Small help text typos by @colinvwood in #125
BUG: Fix assembly-megahit fails when num_cpu_threads > 1 on Macs by auto-resetting num_cpu_threads to 1 by @fethalen in #133
CI: add changelog workflow by @misialq in #136
MAINT: remove actions collate_contigs, collate_genomes and partition_contigs by @VinzentRisch in #135
New Contributors¶
@gregcaporaso made their first contribution in #38
@nbokulich made their first contribution in #43
@lizgehret made their first contribution in #47
@Sann5 made their first contribution in #52
@ChristosMatzoros made their first contribution in #50
@mikerobeson made their first contribution in #65
@colinvwood made their first contribution in #63
@Oddant1 made their first contribution in #46
@DorielaGrabocka made their first contribution in #68
@VinzentRisch made their first contribution in #103
@q2d2 made their first contribution in #107
@Copilot made their first contribution in #124
@fethalen made their first contribution in #133
Full Changelog: #2022.11.0...2025.10.0
What’s Changed¶
FIX: enable multi-processing on Linux by @misialq in #33
fix file name to sample id assumption by @gregcaporaso in #38
Specify default settings for all actions by @nbokulich in #43
FIX: correct indexing params spec by @misialq in #45
ENH: allow passing genome references to evaluate-contigs action by @misialq in #44
PIN: relax bowtie2 pin to resolve community distro failures by @lizgehret in #47
CI: update to new CI by @ebolyen in #53
Closes Issue #51: Cannot download some files from the evaluate-contigs qzv by @Sann5 in #52
BUG: fix phred-offset autodetection by @misialq in #57
MAINT: update README badges by @misialq in #61
Added handling for empty or None sample_names by @ChristosMatzoros in #50
Issue 42: expose additional visualizations generated by QUAST in the evaluate-contigs visualization by @Sann5 in #54
adding more params to evaluate_contigs by @mikerobeson in #65
error informatively on empty input files for index-contigs by @colinvwood in #63
collect all contig files inside index-contigs by @colinvwood in #59
DEP: add pysam to the list of dependencies by @misialq in #67
Parallelize assemble megahit by @Oddant1 in #46
No more types genomics by @Oddant1 in #71
ENH: co-assembling contigs from multiple samples (#22) by @DorielaGrabocka in #68
CI: update the distro by @misialq in #79
ENH: allow passing already aligned reads to evaluate-quast by @DorielaGrabocka in #78
FIX: QUAST visualization button links should point to the correct set of files by @misialq in #75
ENH: add the ability to generate QUAST visualizations without Icarus viewers by @misialq in #74
LANG: dependency testing for python 3.9 updates to metagenome distro by @lizgehret in #80
PIN: adds pysam back into recipe file by @lizgehret in #86
DEV: 2024.10 by @nbokulich in #87
ENH: add more indexing and read mapping options by @misialq in #81
ENH: evaluate-contigs action outputs a results table to enable filtering of samples by @DorielaGrabocka in #85
ENH: make contig IDs unique across samples by @DorielaGrabocka in #88
ENH: action to rename contigs using shortuuid, uuid3, uuid4 or uuid5 by @DorielaGrabocka in #89
Use new test config by @Oddant1 in #94
REF: fix private imports for q2-types refactor by @ebolyen in #95
FIX: pass BAM files to metaquast in the correct order by @misialq in #90
ENH: QUAST outputs downloaded genome artifacts by @DorielaGrabocka in #96
ENH: add action to collate genomes to GenomeData[DNASequences] by @DorielaGrabocka in #99
MAINT: use tempfiles in tests by @misialq in #100
CI: Update download and upload artifact actions to v4 by @VinzentRisch in #103
MAINT: update README by @misialq in #104
setup.py -> pyproject.toml by @q2d2 in #107
BUG: fix path in version file by @lizgehret in #109
MAINT: update SPAdes to 4.0.0 by @misialq in #108
PIN: template out SPAdes version req by @lizgehret in #110
ENH: add ‘filter-contigs’ action by @misialq in #92
MAINT: update recipe run reqs to require most recent q2-pkg builds by @lizgehret in #111
MAINT: change input and output names for consistency by @VinzentRisch in #112
FIX: remove the ‘meta’ option from assemble-megahit presets by @misialq in #113
ENH: add an action to simulate reads with mason by @misialq in #115
CI: update workflows to the most recent versions by @misialq in #117
CI: split Q2 workflow into a seprate yaml by @misialq in #119
CI: update the Docker push workflow by @misialq in #120
MAINT: repository maintenance by @misialq in #121
CI: build Docker image when tagged by @misialq in #122
ENH: allow contig filtering based on metadata IDs only by @Copilot in #124
DEP: template out version pins by @lizgehret in #128
Small help text typos by @colinvwood in #125
BUG: Fix assembly-megahit fails when num_cpu_threads > 1 on Macs by auto-resetting num_cpu_threads to 1 by @fethalen in #133
CI: add changelog workflow by @misialq in #136
MAINT: remove actions collate_contigs, collate_genomes and partition_contigs by @VinzentRisch in #135
New Contributors¶
@gregcaporaso made their first contribution in #38
@nbokulich made their first contribution in #43
@lizgehret made their first contribution in #47
@Sann5 made their first contribution in #52
@ChristosMatzoros made their first contribution in #50
@mikerobeson made their first contribution in #65
@colinvwood made their first contribution in #63
@Oddant1 made their first contribution in #46
@DorielaGrabocka made their first contribution in #68
@VinzentRisch made their first contribution in #103
@q2d2 made their first contribution in #107
@Copilot made their first contribution in #124
@fethalen made their first contribution in #133
Full Changelog: #2022.11.0...2025.10.0
2025.10.0.dev12025.10.0.dev1
Fri Oct 03 2025
2025.7.0.dev1
Fri Jun 27 2025
2023.5.0.dev02023.5.0.dev0
Mon Mar 06 2023
What’s Changed¶
- FIX: enable multi-processing on Linux by @misialq in #33
Full Changelog: #2022.11.0...2023.5.0.dev0
What’s Changed¶
FIX: enable multi-processing on Linux by @misialq in #33
Full Changelog: #2022.11.0...2023.5.0.dev0
What’s Changed¶
FIX: enable multi-processing on Linux by @misialq in #33
Full Changelog: #2022.11.0...2023.5.0.dev0
What’s Changed¶
FIX: enable multi-processing on Linux by @misialq in #33
Full Changelog: #2022.11.0...2023.5.0.dev0
2023.2.0.dev02023.2.0.dev0
Mon Feb 13 2023
What’s Changed¶
- FIX: enable multi-processing on Linux by @misialq in #33
Full Changelog: #2022.11.0...2023.2.0.dev0
What’s Changed¶
FIX: enable multi-processing on Linux by @misialq in #33
Full Changelog: #2022.11.0...2023.2.0.dev0
What’s Changed¶
FIX: enable multi-processing on Linux by @misialq in #33
Full Changelog: #2022.11.0...2023.2.0.dev0
What’s Changed¶
FIX: enable multi-processing on Linux by @misialq in #33
Full Changelog: #2022.11.0...2023.2.0.dev0
2022.11.02022.11.0
Wed Dec 14 2022
What’s Changed¶
- FIX: set the default thread count to 1 in all actions by @misialq in #30
Full Changelog: #2022.8.0...2022.11.0
What’s Changed¶
FIX: set the default thread count to 1 in all actions by @misialq in #30
Full Changelog: #2022.8.0...2022.11.0
What’s Changed¶
FIX: set the default thread count to 1 in all actions by @misialq in #30
Full Changelog: #2022.8.0...2022.11.0
What’s Changed¶
FIX: set the default thread count to 1 in all actions by @misialq in #30
Full Changelog: #2022.8.0...2022.11.0
2022.11.0.dev02022.11.0.dev0
Fri Nov 11 2022
What’s Changed¶
- MAINT: readme and header updates by @misialq in #17
- MAINT: add an independent test step to CI by @misialq in #18
- MAINT: more CI improvements by @misialq in #19
- CI/DEP: update recipe and add quast by @ebolyen in #20
- ENH: read mapping to contigs using Bowtie2 by @misialq in #15
- MAINT: clean up CI tasks by @misialq in #24
- ENH: add better pre-commit hooks by @misialq in #25
- MAINT: Update README by @misialq in #26
- MAINT: update conda channel in the readme by @misialq in #28
New Contributors¶
- @ebolyen made their first contribution in #20
Full Changelog: #2022.4.0.dev0...2022.11.0.dev0
What’s Changed¶
MAINT: readme and header updates by @misialq in #17
MAINT: add an independent test step to CI by @misialq in #18
MAINT: more CI improvements by @misialq in #19
CI/DEP: update recipe and add quast by @ebolyen in #20
ENH: read mapping to contigs using Bowtie2 by @misialq in #15
MAINT: clean up CI tasks by @misialq in #24
ENH: add better pre-commit hooks by @misialq in #25
MAINT: Update README by @misialq in #26
MAINT: update conda channel in the readme by @misialq in #28
New Contributors¶
@ebolyen made their first contribution in #20
Full Changelog: #2022.4.0.dev0...2022.11.0.dev0
What’s Changed¶
MAINT: readme and header updates by @misialq in #17
MAINT: add an independent test step to CI by @misialq in #18
MAINT: more CI improvements by @misialq in #19
CI/DEP: update recipe and add quast by @ebolyen in #20
ENH: read mapping to contigs using Bowtie2 by @misialq in #15
MAINT: clean up CI tasks by @misialq in #24
ENH: add better pre-commit hooks by @misialq in #25
MAINT: Update README by @misialq in #26
MAINT: update conda channel in the readme by @misialq in #28
New Contributors¶
@ebolyen made their first contribution in #20
Full Changelog: #2022.4.0.dev0...2022.11.0.dev0
What’s Changed¶
MAINT: readme and header updates by @misialq in #17
MAINT: add an independent test step to CI by @misialq in #18
MAINT: more CI improvements by @misialq in #19
CI/DEP: update recipe and add quast by @ebolyen in #20
ENH: read mapping to contigs using Bowtie2 by @misialq in #15
MAINT: clean up CI tasks by @misialq in #24
ENH: add better pre-commit hooks by @misialq in #25
MAINT: Update README by @misialq in #26
MAINT: update conda channel in the readme by @misialq in #28
New Contributors¶
@ebolyen made their first contribution in #20
Full Changelog: #2022.4.0.dev0...2022.11.0.dev0
2022.8.02022.8.0
Mon Aug 29 2022
What’s Changed¶
- MAINT: readme and header updates by @misialq in #17
- MAINT: add an independent test step to CI by @misialq in #18
- MAINT: more CI improvements by @misialq in #19
- CI/DEP: update recipe and add quast by @ebolyen in #20
- ENH: read mapping to contigs using Bowtie2 by @misialq in #15
- MAINT: clean up CI tasks by @misialq in #24
- ENH: add better pre-commit hooks by @misialq in #25
- MAINT: Update README by @misialq in #26
- MAINT: update conda channel in the readme by @misialq in #28
New Contributors¶
- @ebolyen made their first contribution in #20
Full Changelog: #2022.4.0.dev0...2022.8.0
What’s Changed¶
MAINT: readme and header updates by @misialq in #17
MAINT: add an independent test step to CI by @misialq in #18
MAINT: more CI improvements by @misialq in #19
CI/DEP: update recipe and add quast by @ebolyen in #20
ENH: read mapping to contigs using Bowtie2 by @misialq in #15
MAINT: clean up CI tasks by @misialq in #24
ENH: add better pre-commit hooks by @misialq in #25
MAINT: Update README by @misialq in #26
MAINT: update conda channel in the readme by @misialq in #28
New Contributors¶
@ebolyen made their first contribution in #20
Full Changelog: #2022.4.0.dev0...2022.8.0
What’s Changed¶
MAINT: readme and header updates by @misialq in #17
MAINT: add an independent test step to CI by @misialq in #18
MAINT: more CI improvements by @misialq in #19
CI/DEP: update recipe and add quast by @ebolyen in #20
ENH: read mapping to contigs using Bowtie2 by @misialq in #15
MAINT: clean up CI tasks by @misialq in #24
ENH: add better pre-commit hooks by @misialq in #25
MAINT: Update README by @misialq in #26
MAINT: update conda channel in the readme by @misialq in #28
New Contributors¶
@ebolyen made their first contribution in #20
Full Changelog: #2022.4.0.dev0...2022.8.0
What’s Changed¶
MAINT: readme and header updates by @misialq in #17
MAINT: add an independent test step to CI by @misialq in #18
MAINT: more CI improvements by @misialq in #19
CI/DEP: update recipe and add quast by @ebolyen in #20
ENH: read mapping to contigs using Bowtie2 by @misialq in #15
MAINT: clean up CI tasks by @misialq in #24
ENH: add better pre-commit hooks by @misialq in #25
MAINT: Update README by @misialq in #26
MAINT: update conda channel in the readme by @misialq in #28
New Contributors¶
@ebolyen made their first contribution in #20
Full Changelog: #2022.4.0.dev0...2022.8.0
2022.4.0.dev02022.4.0.dev0
Wed Apr 20 2022
2021.8.0.dev02021.8.0.dev0
Wed Jun 16 2021

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43b373d

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2025.10: 2025.10/moshpit
2025.4: 2025.4/moshpit
2024.10: 2024.10/metagenome

2025.10.02025.10.0

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2025.10.0.dev12025.10.0.dev1

2025.7.0.dev1

2023.5.0.dev02023.5.0.dev0

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2023.2.0.dev02023.2.0.dev0

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2022.11.02022.11.0

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2022.11.0.dev02022.11.0.dev0

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2022.8.02022.8.0

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2022.4.0.dev02022.4.0.dev0

2021.8.0.dev02021.8.0.dev0